Graph.hpp File Reference

Graph class. More...

#include <vector>
#include <set>
#include <unordered_map>
#include <gatb/system/api/IThread.hpp>
#include <gatb/bank/api/IBank.hpp>
#include <gatb/kmer/impl/Model.hpp>
#include <gatb/tools/math/Integer.hpp>
#include <gatb/kmer/impl/BloomBuilder.hpp>
#include <gatb/kmer/impl/DebloomAlgorithm.hpp>
#include <gatb/kmer/impl/MPHFAlgorithm.hpp>
#include <gatb/tools/designpattern/api/Iterator.hpp>
#include <gatb/tools/designpattern/impl/IteratorHelpers.hpp>
#include <gatb/tools/misc/impl/Algorithm.hpp>
#include <gatb/tools/misc/impl/Property.hpp>
#include <gatb/tools/misc/api/Enums.hpp>
#include <gatb/tools/storage/impl/Storage.hpp>
#include <gatb/debruijn/impl/NodesDeleter.hpp>

Include dependency graph for Graph.hpp:

Classes
struct	Node_t< Value_t >
	Node structure representing a node in the De Bruijn graph. More...
struct	BranchingNode_t< Node >
	Specific Node structure representing a branching node in the De Bruijn graph. More...
struct	SimpleNode< Node >
	Specific Node structure representing a simple node in the De Bruijn graph. More...
struct	Edge_t< Node_t >
	Definition of an Edge, ie a transition between two nodes in the De Bruijn graph. More...
struct	BranchingEdge_t< Node, Edge >
	Specific Edge structure representing a transition between two branching nodes. More...
struct	Path_t< Node >
	Structure representing a path in the De Bruijn graph. More...
class	GraphTemplate< Node, Edge, GraphDataVariant >
	Class representing a De Bruijn graph. More...

Namespaces
	gatb::core
	Core package of the GATP project.
	gatb::core::debruijn
	Package for De Bruijn graph management.
	gatb::core::debruijn::impl
	Implementation package for De Bruijn graph management.

Functions
template<typename T >
bool	operator< (const Path_t< T > &a, const Path_t< T > &b)
template<typename T >
std::ostream &	operator<< (std::ostream &s, const Path_t< T > &p)

Detailed Description

Graph class.

Date

01/03/2013

Author

edrezen