gatb.core-API-0.0.0
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A
CountProcessorDump
(
gatb::core::kmer::impl
)
HostInfo
(
gatb::core::tools::misc::impl
)
LargeIntDummy
(
gatb::core::tools::math
)
SimpleNode
(
gatb::core::debruijn::impl
)
CountProcessorDumpKff
(
gatb::core::kmer::impl
)
I
LibraryInfo
(
gatb::core::tools::misc::impl
)
SimplePathsTraversalTemplate
(
gatb::core::debruijn::impl
)
AbstractBank
(
gatb::core::bank::impl
)
CountProcessorHistogram
(
gatb::core::kmer::impl
)
LocalTimeInfo
(
gatb::core::tools::misc::impl
)
SortingCountAlgorithm
(
gatb::core::kmer::impl
)
AdaptatorDefault
(
gatb::core::tools::collections::impl
)
CountProcessorSolidityAbstract
(
gatb::core::kmer::impl
)
IBank
(
gatb::core::bank
)
M
System
(
gatb::core::system::impl
)
AbstractSubjectIterator
(gatb::core::tools::dp::impl)
Kmer::Count
(
gatb::core::kmer::impl
)
IBankFactory
(
gatb::core::bank
)
SystemInfoCommon
(
gatb::core::system::impl
)
Abundance
(
gatb::core::tools::misc
)
CommonFile
(
gatb::core::system::impl
)
BankBinary::Iterator
(
gatb::core::bank::impl
)
MonumentTraversalTemplate
(
gatb::core::debruijn::impl
)
SystemInfoLinux
(
gatb::core::system::impl
)
ArrayData
(
gatb::core::tools::misc
)
CpuInfoCommon
(
gatb::core::system::impl
)
BankFasta::Iterator
(
gatb::core::bank::impl
)
MPHFTerminatorTemplate
(
gatb::core::debruijn::impl
)
SystemInfoMacos
(
gatb::core::system::impl
)
Algorithm
(
gatb::core::tools::misc::impl
)
ISystemInfo::CpuInfo
(
gatb::core::system
)
IContainerNode
(
gatb::core::debruijn
)
Kmer::ModelAbstract
(
gatb::core::kmer::impl
)
SystemInfoWindows
(
gatb::core::system::impl
)
ArgData
(
gatb::core::tools::misc::impl
)
Collection
(
gatb::core::tools::collections
)
IterativeExtensions
(
gatb::core::debruijn::impl
)
Kmer::ModelCanonical
(
gatb::core::kmer::impl
)
SmartPointer
(
gatb::core::system
)
B
Container
(
gatb::core::tools::collections
)
ICountProcessor
(
gatb::core::kmer
)
Kmer::ModelDirect
(
gatb::core::kmer::impl
)
SerialDispatcher
(gatb::core::tools::dp::impl)
CollectionAbstract
(
gatb::core::tools::collections::impl
)
IFile
(
gatb::core::system
)
Kmer::ModelMinimizer
(
gatb::core::kmer::impl
)
STLIterator
(gatb::core::tools::dp::impl)
Bank
(
gatb::core::bank::impl
)
CollectionCache
(
gatb::core::tools::collections::impl
)
IFileSystem
(
gatb::core::system
)
MPHFAlgorithm
(
gatb::core::kmer::impl
)
Subject
(gatb::core::tools::dp::impl)
BankAlbum
(
gatb::core::bank::impl
)
CollectionCacheSorted
(
gatb::core::tools::collections::impl
)
IMemory
(
gatb::core::system
)
MemoryAllocatorStdlib
(
gatb::core::system::impl
)
SubjectIterator
(gatb::core::tools::dp::impl)
BankBinary
(
gatb::core::bank::impl
)
ContainerSet
(
gatb::core::tools::collections::impl
)
IMemoryAllocator
(
gatb::core::system
)
MemoryBounded
(
gatb::core::system::impl
)
Stringify
(
gatb::core::tools::misc::impl
)
BankComposite
(
gatb::core::bank::impl
)
CancellableIterator
(gatb::core::tools::dp::impl)
IMemoryComponent
(
gatb::core::system
)
MemoryCommon
(
gatb::core::system::impl
)
StringLine
(
gatb::core::tools::misc::impl
)
BankConverterAlgorithm
(
gatb::core::bank::impl
)
CompositeIterator
(gatb::core::tools::dp::impl)
IMemoryOperations
(
gatb::core::system
)
MemoryOperationsCommon
(
gatb::core::system::impl
)
Storage
(gatb::core::tools::storage::impl)
BankDelegate
(
gatb::core::bank::impl
)
CompoundIterator
(gatb::core::tools::dp::impl)
ISmartPointer
(
gatb::core::system
)
MemorySizeStore
(
gatb::core::system::impl
)
StorageFactory
(gatb::core::tools::storage::impl)
BankFasta
(
gatb::core::bank::impl
)
Data::ConvertASCII
(
gatb::core::tools::misc
)
ISynchronizer
(
gatb::core::system
)
MapMPHF
(
gatb::core::tools::collections::impl
)
StorageFileFactory
(gatb::core::tools::storage::impl)
BankFiltered
(
gatb::core::bank::impl
)
Cell
(gatb::core::tools::storage::impl)
ISystemInfo
(
gatb::core::system
)
N
StorageHDF5Factory
(gatb::core::tools::storage::impl)
BankHelper
(
gatb::core::bank::impl
)
CollectionFile
(gatb::core::tools::storage::impl)
IThread
(
gatb::core::system
)
StorageTools
(gatb::core::tools::storage::impl)
BankRandom
(
gatb::core::bank::impl
)
CollectionHDF5
(gatb::core::tools::storage::impl)
IThreadFactory
(
gatb::core::system
)
Node_t
(
gatb::core::debruijn::impl
)
T
BankSplitter
(
gatb::core::bank::impl
)
CollectionNode
(gatb::core::tools::storage::impl)
IThreadGroup
(
gatb::core::system
)
NullTerminatorTemplate
(
gatb::core::debruijn::impl
)
BankStrings
(
gatb::core::bank::impl
)
D
ITime
(
gatb::core::system
)
NullTraversalTemplate
(
gatb::core::debruijn::impl
)
TerminatorTemplate
(
gatb::core::debruijn::impl
)
BranchingAlgorithm
(
gatb::core::debruijn::impl
)
IBloom
(
gatb::core::tools::collections::impl
)
NullIterator
(gatb::core::tools::dp::impl)
TraversalTemplate
(
gatb::core::debruijn::impl
)
BranchingEdge_t
(
gatb::core::debruijn::impl
)
DebloomAlgorithm
(
gatb::core::kmer::impl
)
IterableAdaptor
(
gatb::core::tools::collections::impl
)
O
ThreadFactoryLinux
(
gatb::core::system::impl
)
BranchingNode_t
(
gatb::core::debruijn::impl
)
Dispatcher
(gatb::core::tools::dp::impl)
IterableFile
(
gatb::core::tools::collections::impl
)
ThreadFactoryMacos
(
gatb::core::system::impl
)
BranchingTerminatorTemplate
(
gatb::core::debruijn::impl
)
Data
(
gatb::core::tools::misc
)
IterableHelpers
(
gatb::core::tools::collections::impl
)
OAHash
(
gatb::core::tools::collections::impl
)
ThreadGroup
(
gatb::core::system::impl
)
BankKmers
(
gatb::core::kmer::impl
)
E
IteratorFile
(
gatb::core::tools::collections::impl
)
Option
(
gatb::core::tools::misc::impl
)
ThreadObject
(
gatb::core::system::impl
)
BankStats
(
gatb::core::kmer::impl
)
Iterable
(
gatb::core::tools::collections
)
OptionFailure
(
gatb::core::tools::misc::impl
)
TimeAbstract
(
gatb::core::system::impl
)
BloomBuilder
(
gatb::core::kmer::impl
)
Edge_t
(
gatb::core::debruijn::impl
)
ICommand
(
gatb::core::tools::dp
)
OptionNoParam
(
gatb::core::tools::misc::impl
)
TimeCycle
(
gatb::core::system::impl
)
Bag
(
gatb::core::tools::collections
)
Exception
(
gatb::core::system
)
IDispatcher
(
gatb::core::tools::dp
)
OptionOneParam
(
gatb::core::tools::misc::impl
)
TimeSystem
(
gatb::core::system::impl
)
BagCache
(
gatb::core::tools::collections::impl
)
ExceptionComposite
(
gatb::core::system
)
IteratorAdaptor
(gatb::core::tools::dp::impl)
OptionsHelpVisitor
(
gatb::core::tools::misc::impl
)
TruncateIterator
(gatb::core::tools::dp::impl)
BagCacheSorted
(
gatb::core::tools::collections::impl
)
ExceptionErrno
(
gatb::core::system
)
IObserver
(
gatb::core::tools::dp
)
OptionsParser
(
gatb::core::tools::misc::impl
)
TimeInfo
(
gatb::core::tools::misc::impl
)
BagCacheSortedBuffered
(
gatb::core::tools::collections::impl
)
ExceptionNotImplemented
(
gatb::core::system
)
ISubject
(
gatb::core::tools::dp
)
P
TokenizerIterator
(
gatb::core::tools::misc::impl
)
BagFile
(
gatb::core::tools::collections::impl
)
EventInfo
(
gatb::core::tools::dp
)
Iterator
(
gatb::core::tools::dp
)
Tool
(
gatb::core::tools::misc::impl
)
Bloom
(
gatb::core::tools::collections::impl
)
F
IteratorListener
(
gatb::core::tools::dp
)
Path_t
(
gatb::core::debruijn::impl
)
U
BloomCacheCoherent
(
gatb::core::tools::collections::impl
)
IntegerTemplate
(
gatb::core::tools::math
)
PartiInfo
(
gatb::core::kmer::impl
)
BloomContainer
(
gatb::core::tools::collections::impl
)
FunctorSetVariant
(
gatb::core::debruijn::impl
)
IHistogram
(
gatb::core::tools::misc
)
ProgressIterator
(
gatb::core::tools::collections::impl
)
UnitigsConstructionAlgorithm
(
gatb::core::debruijn::impl
)
BloomExtendedNeighborCoherent
(
gatb::core::tools::collections::impl
)
FileSystemCommon
(
gatb::core::system::impl
)
IOptionsParser
(
gatb::core::tools::misc
)
PairedIterator
(gatb::core::tools::dp::impl)
V
BloomFactory
(
gatb::core::tools::collections::impl
)
FileSystemLinux
(
gatb::core::system::impl
)
IOptionsParserVisitor
(
gatb::core::tools::misc
)
ProductIterator
(gatb::core::tools::dp::impl)
BloomNeighborCoherent
(
gatb::core::tools::collections::impl
)
FileSystemMacos
(
gatb::core::system::impl
)
IProperties
(
gatb::core::tools::misc
)
Progress
(
gatb::core::tools::misc::impl
)
VisibilityOptionsVisitor
(
gatb::core::tools::misc::impl
)
BloomNull
(
gatb::core::tools::collections::impl
)
FilterIterator
(gatb::core::tools::dp::impl)
IPropertiesVisitor
(
gatb::core::tools::misc
)
ProgressNone
(
gatb::core::tools::misc::impl
)
Vector
(
gatb::core::tools::misc
)
BloomSynchronized
(
gatb::core::tools::collections::impl
)
G
IProperty
(
gatb::core::tools::misc
)
ProgressTimer
(
gatb::core::tools::misc::impl
)
X
BooPHF
(
gatb::core::tools::collections::impl
)
ICell
(
gatb::core::tools::storage
)
ProgressTimerAndSystem
(
gatb::core::tools::misc::impl
)
BagHDF5
(gatb::core::tools::storage::impl)
GraphTemplate
(
gatb::core::debruijn::impl
)
K
Properties
(
gatb::core::tools::misc::impl
)
XmlDumpPropertiesVisitor
(
gatb::core::tools::misc::impl
)
C
GraphUnitigsTemplate
(
gatb::core::debruijn::impl
)
Partition
(gatb::core::tools::storage::impl)
XmlReader
(
gatb::core::tools::misc::impl
)
Group
(gatb::core::tools::storage::impl)
Kmer
(
gatb::core::kmer::impl
)
PartitionCache
(gatb::core::tools::storage::impl)
d
ContainerNode
(
gatb::core::debruijn::impl
)
H
Kmer::KmerCanonical
(
gatb::core::kmer::impl
)
R
ContainerNodeCascading
(
gatb::core::debruijn::impl
)
Kmer::KmerDirect
(
gatb::core::kmer::impl
)
dag_vector
(dag)
ContainerNodeNoCFP
(
gatb::core::debruijn::impl
)
Hash16
(
gatb::core::tools::collections::impl
)
Kmer::KmerMinimizer
(
gatb::core::kmer::impl
)
Repartitor
(
gatb::core::kmer::impl
)
i
CounterBuilder
(
gatb::core::kmer::impl
)
HashFunctors
(
gatb::core::tools::collections::impl
)
L
RawDumpPropertiesVisitor
(
gatb::core::tools::misc::impl
)
CountProcessorAbstract
(
gatb::core::kmer::impl
)
HierarchyParserVisitor
(
gatb::core::tools::misc::impl
)
IOptionsParser::Result
(
gatb::core::tools::misc
)
Storage::istream
(gatb::core::tools::storage::impl)
CountProcessorChain
(
gatb::core::kmer::impl
)
Histogram
(
gatb::core::tools::misc::impl
)
LocalObject
(
gatb::core::system
)
S
o
CountProcessorCustomProxy
(
gatb::core::kmer::impl
)
HistogramCache
(
gatb::core::tools::misc::impl
)
LocalSynchronizer
(
gatb::core::system
)
CountProcessorCutoff
(
gatb::core::kmer::impl
)
HistogramNull
(
gatb::core::tools::misc::impl
)
ListIterator
(gatb::core::tools::dp::impl)
Sequence
(
gatb::core::bank
)
Storage::ostream
(gatb::core::tools::storage::impl)
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