gatb::core::kmer::impl Namespace Reference

Implementation for genomic databases management. More...

Classes
class	BankKmers
	Bank whose sequences are all the possible kmers of a kmer model. More...
struct	BankStats
	Statistics about banks. More...
class	BloomBuilder
	Helper that builds a Bloom filter from an iterator of kmers. More...
class	CounterBuilder
	Class that counts the number of occurrences of a kmer in several banks. More...
class	CountProcessorAbstract
class	CountProcessorChain
class	CountProcessorCustomProxy
class	CountProcessorCutoff
class	CountProcessorDump
class	CountProcessorDumpKff
class	CountProcessorHistogram
class	CountProcessorSolidityAbstract
class	DebloomAlgorithm
	Construction of the set of critical false positives nodes. More...
struct	Kmer
	Entry point for kmer management. More...
class	MPHFAlgorithm
	Algorithm that builds a hash table whose keys are kmers and values are kmer abundances. More...
class	PartiInfo
class	Repartitor
class	SortingCountAlgorithm
	Class performing the kmer counting (also known as 'DSK') More...

Detailed Description

Implementation for genomic databases management.