SortingCountAlgorithm.hpp File Reference

Counting kmers from a set of sequences. More...

#include <gatb/tools/misc/impl/Algorithm.hpp>
#include <gatb/bank/api/IBank.hpp>
#include <gatb/kmer/api/ICountProcessor.hpp>
#include <gatb/kmer/impl/Model.hpp>
#include <gatb/kmer/impl/BankKmers.hpp>
#include <gatb/kmer/impl/Configuration.hpp>
#include <gatb/kmer/impl/PartiInfo.hpp>
#include <gatb/tools/storage/impl/Storage.hpp>
#include <string>

Include dependency graph for SortingCountAlgorithm.hpp:

Classes
class	SortingCountAlgorithm< span >
	Class performing the kmer counting (also known as 'DSK') More...

Namespaces
	gatb::core
	Core package of the GATP project.
	gatb::core::kmer
	Package for genomic databases management.
	gatb::core::kmer::impl
	Implementation for genomic databases management.

Detailed Description

Counting kmers from a set of sequences.

Date

01/03/2013

Author

edrezen